How many volts is your system? The beginning of your post made me wonder if you are using a 12v inverter on a 24v (or more) battery bank. Or maybe your inverter is just on the 12v setting?
My charge controller handles the equalizing for me, can you program it to zap the battieries uniformly for a few hours? I can set how many hours I want to equalize for, usually 2-4 hours and I can also program the charge controller to charge to a specific voltage. For my 12v system, that would be 14.4v. For the purpose of trying to restore the batteries, longer may be good but keep an eye on the liquid levels because they're gonna boil good.
My charge controller handles the equalizing for me, can you program it to zap the battieries uniformly for a few hours? I can set how many hours I want to equalize for, usually 2-4 hours and I can also program the charge controller to charge to a specific voltage. For my 12v system, that would be 14.4v. For the purpose of trying to restore the batteries, longer may be good but keep an eye on the liquid levels because they're gonna boil good.